[Nix-dev] bio-perl patch

[Tim Horton]

Hello,

Attached is a patch to perl-packges.nix to include bio-perl and its
dependencies. 

Is perl-packages.nix automatically generated from cpan? If so is the
code publicly available?

Thanks,
Tim
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>From 8d35968c530d71cc748eed0caef8774d26eb4e5b Mon Sep 17 00:00:00 2001
From: Tim Horton <tmhorton at gmail.com>
Date: Thu, 24 Jun 2010 12:53:20 -0700
Subject: [PATCH] Added bioperl-1.6.2 and basic dependencies

---
 pkgs/top-level/perl-packages.nix |   18 ++++++++++++++++++
 1 files changed, 18 insertions(+), 0 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index dadc869..c171b0b 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -150,6 +150,15 @@ rec {
     propagatedBuildInputs = [SubExporter VariableMagic];
   };
 
+  BioPerl = buildPerlPackage rec {
+    name = "BioPerl-1.6.1";
+    src = fetchurl {
+      url = "mirror://cpan/authors/id/C/CJ/CJFIELDS/${name}.tar.gz";
+      sha256 = "18wmvkfvsaz0d63wlwi8czyhbb5yb28y5k02gdb77nad5g7dldmc";
+    };
+    propagatedBuildInputs = [DataStag DBFile IOString];
+  };
+  
   BitVector = buildPerlPackage {
     name = "Bit-Vector-6.4";
     src = fetchurl {
@@ -810,6 +819,15 @@ rec {
     propagatedBuildInputs = [TestException ClassAccessorChained];
   };
 
+  DataStag = buildPerlPackage rec {
+    name = "Data-Stag-0.11";
+    src = fetchurl {
+      url = "mirror://cpan/authors/id/C/CM/CMUNGALL/${name}.tar.gz";
+      sha256 = "1cisnn3cwqx1gwwb7vnfxz6bbvk521imwmq6zd2n8a2i0gxqdnk9";
+    };
+    propagatedBuildInputs = [IOString];
+  };
+
   DataVisitor = buildPerlPackage rec {
     name = "Data-Visitor-0.25";
     src = fetchurl {
-- 
1.7.1